BioFSharp 2.0.0-preview.3

.NET Standard 2.0
This is a prerelease version of BioFSharp.
Install-Package BioFSharp -Version 2.0.0-preview.3
dotnet add package BioFSharp --version 2.0.0-preview.3
<PackageReference Include="BioFSharp" Version="2.0.0-preview.3" />
For projects that support PackageReference, copy this XML node into the project file to reference the package.
paket add BioFSharp --version 2.0.0-preview.3
The NuGet Team does not provide support for this client. Please contact its maintainers for support.
#r "nuget: BioFSharp, 2.0.0-preview.3"
#r directive can be used in F# Interactive, C# scripting and .NET Interactive. Copy this into the interactive tool or source code of the script to reference the package.
// Install BioFSharp as a Cake Addin
#addin nuget:?package=BioFSharp&version=2.0.0-preview.3&prerelease

// Install BioFSharp as a Cake Tool
#tool nuget:?package=BioFSharp&version=2.0.0-preview.3&prerelease
The NuGet Team does not provide support for this client. Please contact its maintainers for support.

Open source bioinformatics and computational biology toolbox written in F#.

Product Versions
.NET net5.0 net5.0-windows net6.0 net6.0-android net6.0-ios net6.0-maccatalyst net6.0-macos net6.0-tvos net6.0-windows
.NET Core netcoreapp2.0 netcoreapp2.1 netcoreapp2.2 netcoreapp3.0 netcoreapp3.1
.NET Standard netstandard2.0 netstandard2.1
.NET Framework net461 net462 net463 net47 net471 net472 net48
MonoAndroid monoandroid
MonoMac monomac
MonoTouch monotouch
Tizen tizen40 tizen60
Xamarin.iOS xamarinios
Xamarin.Mac xamarinmac
Xamarin.TVOS xamarintvos
Xamarin.WatchOS xamarinwatchos
Compatible target framework(s)
Additional computed target framework(s)
Learn more about Target Frameworks and .NET Standard.

NuGet packages (9)

Showing the top 5 NuGet packages that depend on BioFSharp:

Package Downloads
BioFSharp.IO

Read/write functions for various biological file formats

BioFSharp.ML

Machine learning with BioFSharp and CNTK.Net.

BioFSharp.BioContainers

Open source bioinformatics and computational biology toolbox written in F#.

BioFSharp.Parallel

GPU parallelized functions from BioFSharp

BIO-BTE-06-L-7_Aux

Auxiliary functions for the course BIO-BTE-06-L-7

GitHub repositories

This package is not used by any popular GitHub repositories.

Version Downloads Last updated
2.0.0-preview.3 93 5/11/2022
2.0.0-preview.2 67 2/13/2022
2.0.0-preview.1 75 1/26/2022
2.0.0-beta7 203 9/29/2021
2.0.0-beta6 213 5/10/2021
2.0.0-beta5 537 2/16/2021
2.0.0-beta4 1,455 6/24/2020
2.0.0-beta3 447 6/22/2020
2.0.0-beta2 492 6/22/2020
2.0.0-beta1 472 5/6/2020
2.0.0-beta 495 4/28/2020
1.2.1-beta2 465 4/28/2020
1.2.1-beta1 452 4/28/2020
1.2.0 1,123 3/30/2020
1.1.0 656 3/23/2020
1.0.3 617 2/26/2020
1.0.2 671 2/19/2020

All packages now target netstandard2.0 as lowest common denominator.
Additions:**
BioFSharp**:
[Breaking] [Conversion extensions for BioCollections]()
[Breaking] [Tagged Sequence and Phylogenetic Tree have been reworked as top level types](https://github.com/CSBiology/BioFSharp/commit/aec8232dd7725cdbb99a038ebe0c99f26922f31a)
[Add functionality to construct phylogenetic trees from clustered data or raw sequence data](https://github.com/CSBiology/BioFSharp/commit/aec8232dd7725cdbb99a038ebe0c99f26922f31a)
BioFSharp.BioContainers**
BLAST biocontainer :
full blastn, blastn-short, megablast, and dc-megablast DSLs
[Breaking] full blastp, blastp-fast, and blastp-short DSLs
TargetP BioContainer :
Add functions to run the container with a mounted directory
Add TargetP2 BioContainer API
BioFSharp.IO**:
OBO parser: Extended term parser for spec 1.4
OBO parser: fix (#111)[https://github.com/CSBiology/BioFSharp/issues/111]
SOFT parser now parses Data tables
OBO Parser: add verbosity settings ([#129](https://github.com/CSBiology/BioFSharp/pull/129))
[ADD DSSP and Stride parsers](https://github.com/CSBiology/BioFSharp/commit/a1bc02c81d0bfba414313155cec93ef4b6951baa)
[ADD PDB Parser (only some records supported)](https://github.com/CSBiology/BioFSharp/commit/426dee64f0d24b4c9976aac9400df3635d8aef1b))
Bugfixes:**
BioFSharp**:
Fix stack overflow on Phylogenetic tree construction based on hierarchical clusters
BioFSharp.IO**:
OBO parser now correctly parses lists of relationships
[Breaking] FastA.writeToStream is now correctly typed and does not close the stream after writing
SOFT parser now parses sample_label / sample_label_protocol correctly
[Fix fasta writer using UTF8BOM encoding](https://github.com/CSBiology/BioFSharp/commit/beb4158e8e8d71e7c956347db1df2f2e99f8a5e4) ((#116)[https://github.com/CSBiology/BioFSharp/issues/116])
Fix newick writer missing leaf case